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Table 1 Comparison of runtimes of OrthoMCL and PorthoMCL for different number of genomes

From: PorthoMCL: Parallel orthology prediction using MCL for the realm of massive genome availability

Genomes Proteins BLAST Hits OrthoMCL PorthoMCL Speedup
10 19,240 298,647 0:00:18 0:00:11 164 %
29,912 637,091 0:01:07 0:00:21 319 %
30,111 656,689 0:01:16 0:00:23 330 %
32,962 721,997 0:01:12 0:00:24 300 %
50 126,020 5,771,483 0:15:55 0:05:55 269 %
127,724 6,363,917 0:27:53 0:06:08 455 %
133,974 6,418,035 0:08:29 0:06:15 136 %
138,258 7,008,798 0:24:06 0:06:18 383 %
100 252,109 18,326,608 1:02:58 0:31:49 198 %
500 1,327,716 283,850,847 - 17:38:55