Table 1 Comparison of runtimes of OrthoMCL and PorthoMCL for different number of genomes
From: PorthoMCL: Parallel orthology prediction using MCL for the realm of massive genome availability
Genomes | Proteins | BLAST Hits | OrthoMCL | PorthoMCL | Speedup |
|---|---|---|---|---|---|
10 | 19,240 | 298,647 | 0:00:18 | 0:00:11 | 164 % |
29,912 | 637,091 | 0:01:07 | 0:00:21 | 319 % | |
30,111 | 656,689 | 0:01:16 | 0:00:23 | 330 % | |
32,962 | 721,997 | 0:01:12 | 0:00:24 | 300 % | |
50 | 126,020 | 5,771,483 | 0:15:55 | 0:05:55 | 269 % |
127,724 | 6,363,917 | 0:27:53 | 0:06:08 | 455 % | |
133,974 | 6,418,035 | 0:08:29 | 0:06:15 | 136 % | |
138,258 | 7,008,798 | 0:24:06 | 0:06:18 | 383 % | |
100 | 252,109 | 18,326,608 | 1:02:58 | 0:31:49 | 198 % |
500 | 1,327,716 | 283,850,847 | - | 17:38:55 | ∞ |